Workflows
workflow_name (# downloads, # views, scipion version)
fullProcessing_ScipionCombined_fromMoviesTo3Dbionotes
(64, 445, v2.0 (2019-04-23) Diocletian):
Full processing workflow from movies to 3D bionotes.
TestRelionClassify 2D
(61, 423, 1.3):
2D classification using Relion
Streaming_catalogue-1st_part
(60, 398, (2018-05-25) (devel-fixes 7948a08)):
First part of a streaming protocols, right before ctf selection due to technical issues.
DnaB ADP (test 1)
(53, 334, v1.2.1 (2018-10-01) Claudio):
import micrographs, preprocess, ctf, image, picking
monores + localdeblur
(53, 250, v2.0 (2019-04-23) Diocletian):
Basic workflow importing a volume, estimating the local resolution by means of Xmipp - monores and using it to local sharpen the input volume.
NOTES: The monores is using an automatic masking. Monores needs noise surrounding the map, thus the input ...
CTFDiscrepancy
(52, 379, 1.3):
Compare CTF estimation given by two diferent packages.
2D_class_streaming_GL2D_assignation
(49, 239, v2.0 (2019-04-23) Diocletian):
This piece of workflow makes an initial classification of 10k particles using relion2D and cryosparc2, making 32 classes each one. Afterwards, xmipp-GL2D is assigning the new incoming particles on-the-fly to one of the 64 initial classes. At the end, a...
test
(49, 221, v2.0 (2019-04-23) Diocletian):
v1
WIS_D&G_impact
(48, 279, v2.0 (2019-04-23) Diocletian):
basic training
streaming_to_2Dclassification_noDoseWeithed
(41, 171, 2):
This complete workflow is designed to work in streaming from movies to 2D classification in an assisted way. The recommended usage is importing it in an empty project, setting the protocol parameters according to your data and launching them one by one...