Workflows
workflow_name (# downloads, # views, scipion version)
TestRelionClassify 2D
(37, 283, 1.3):
2D classification using Relion
Streaming_catalogue-1st_part
(36, 271, (2018-05-25) (devel-fixes 7948a08)):
First part of a streaming protocols, right before ctf selection due to technical issues.
Relion tutorial (part 2)
(35, 148, v2.0 (2019-04-23) Diocletian):
Part of the workflow for Relion tutorial
CTFDiscrepancy
(30, 263, 1.3):
Compare CTF estimation given by two diferent packages.
DnaB ADP (test 1)
(30, 183, v1.2.1 (2018-10-01) Claudio):
import micrographs, preprocess, ctf, image, picking
test
(27, 95, v2.0 (2019-04-23) Diocletian):
v1
WIS_D&G_impact
(25, 141, v2.0 (2019-04-23) Diocletian):
basic training
monores + localdeblur
(24, 63, v2.0 (2019-04-23) Diocletian):
Basic workflow importing a volume, estimating the local resolution by means of Xmipp - monores and using it to local sharpen the input volume.
NOTES: The monores is using an automatic masking. Monores needs noise surrounding the map, thus the input ...
2D_class_streaming_GL2D_assignation
(17, 48, v2.0 (2019-04-23) Diocletian):
This piece of workflow makes an initial classification of 10k particles using relion2D and cryosparc2, making 32 classes each one. Afterwards, xmipp-GL2D is assigning the new incoming particles on-the-fly to one of the 64 initial classes. At the end, a...
streaming_to_2Dclassification_noDoseWeithed
(15, 49, 2):
This complete workflow is designed to work in streaming from movies to 2D classification in an assisted way. The recommended usage is importing it in an empty project, setting the protocol parameters according to your data and launching them one by one...