Workflows

workflow_name (# downloads, # views, scipion version)
Relion_3_tutorial-betagal (630, 2556, v1.2.1 (2018-09-11) Claudio): Relion 3 tutorial in Scipion. Reaching 2.9 reported by monores.
Cryo electron microscopy of SARS-CoV-2 spike in prefusion state (589, 811, 1.0): Workflow associated to empiar entry 10516 and publication https://doi.org/10.1101/2020.07.08.191072
Atom_Struct_Modeling_Demo (586, 2172, v2.0 (2019-03-06) Diocletian (release-2.0.0 99cd4821da)): Test project used in model building tutorial: https://github.com/I2PC/scipion/wiki/tutorials/tutorial_model_building_basic.pdf
BASIC_Import_Mcorr2_Ctffind4_Summar (422, 1595, 1.2): Basic workflow for facilities: motioncor, ctffind, summary
import_fitChimera_coot_refmac (421, 1646, 1.3): Basic model building; (1) import data, (2) rigid fit with chimera, (3) manual refinement coot and (4) automatic refinement refmac
Wokflow_with_gctf (421, 1590, v1.2.1 (2018-10-01) Claudio): workflow with gctf
Phase_Plate_mottioncor_ctffing_gctf_gain (416, 1609, 1.2): Basic workflow for phase plate collection with motioncor2 ctffind gain and sumamry
streaming_2d_classification_in_batches (413, 1662, 1.2.1): Streaming workflow from movies to relion 2d classification in batches.
All2Monitor_GPU_Import_Gain_Mcor2_MaxShift_gCTF_XmippCTF_CTFcons_Summary (400, 1470, v2.0 (2019-04-23) Diocletian): Workflow to monitor gain stability, movie alignment and ctf estimation using the summary monitor. GPU
fullProcessing_ScipionCombined_fromMoviesTo3Dbionotes (398, 1635, v2.0 (2019-04-23) Diocletian): Full processing workflow from movies to 3D bionotes.