Workflows

workflow_name (# downloads, # views, scipion version)
DnaB ADP (test 1) (320, 562, v1.2.1 (2018-10-01) Claudio): import micrographs, preprocess, ctf, image, picking
SemiAutomaticPicking_Xmipp_Cryolo (302, 354, scipion2 scipion3): Semi automatic picking module using Xmipp and Cryolo, and making an AND consensus. By default, the input micrographs are preprocessed in order to remove hot pixels and to downsample them to simplify the 2D analysis. Also, by default, the particle...
Cryo electron microscopy of SARS-CoV-2 spike in prefusion state (288, 428, 1.0): Workflow associated to empiar entry 10516 and publication https://doi.org/10.1101/2020.07.08.191072
Full SPA image processing of a EMPIAR entry (287, 262, 3.0.0): Full EMPIAR image processing. It does not require manual selection although you might need to review parameters before launching the protocols
Day 3 pasrt 1 subtomogram averaging ribosomes (271, 199, 3.0.0): Workflow practiced during 2021 tomography workshop about subtomogram averaging of a ribosomes dataset
Day 3 part 2 subtomogram averaging HIV (269, 181, 3.0.0): Workflow practiced during 2021 tomography workshop about subtomogram averaging of HIV dataset
pie_2 (266, 228, 3.0.0): mic for relion
T20s_proteosome_tutorial (155, 982, v1.2): Tutorial workflow used for some Scipion courses.
BASIC_Import_Mcorr2_Ctffind4_Gain_Summary (137, 843, 1.2): Basic workflow for data acquisition with import movies, motioncor2, ctffind, gain and summary
TestRelionClassify3D (120, 786, 1.3): 3D calssification using relion, example with and without GPU