Workflows

workflow_name (# downloads, # views, scipion version)
ARM_gain_test1 (35, 165, v2.0 (2019-04-08) Diocletian (release-2.0.0 37dd28f)): Adapted SerialEM-based workflow with NON corrected GAIN from K3
SemiAutomaticPicking_Xmipp_Cryolo (34, 182, scipion2 scipion3): Semi automatic picking module using Xmipp and Cryolo, and making an AND consensus. By default, the input micrographs are preprocessed in order to remove hot pixels and to downsample them to simplify the 2D analysis. Also, by default, the particle...
Cryo electron microscopy of SARS-CoV-2 spike in prefusion state (20, 203, 1.0): Workflow associated to empiar entry 10516 and publication https://doi.org/10.1101/2020.07.08.191072
Reprocessing of EMPIAR-10389 data (urease) with Scipion (19, 162, 1): Scipion workflow from: Using Relion software within Scipion framework Grigory Sharov, Dustin R. Morado, Marta Carroni, José Miguel de la Rosa-Trevín bioRxiv 2020.12.06.399808; doi: https://doi.org/10.1101/2020.12.06.399808
20190805_fraction16 (14, 107, v2.0 (2019-04-23) Diocletian): test
Spike (12, 102, 3.0.0): Workflow Roberto
preprocesing&2Dclass (11, 107, 3.0.0): Roberto to arm
empiar-10180 copy (10, 105, v2.0 (2019-04-23) Diocletian): test
ARM_Spyke (7, 51, 3.0.0): spyke
testReconstruction (2, 7, 3.0.0): This is a template for the December2021 coruse