Workflows
workflow_name (# downloads, # views, scipion version)
From movies to particles
(145, 830, 1.0):
Workflow that uses some of the most advanced algorithms currently present in Scipion. Consensus is a
TOMO_ScipionBox
(141, 1012, (2018-05-18) (release-1.2.1 92b345f)):
Tilted series acquisition as movies
All2Monitor_CPU_Gain_XmippAlign_MaxShift_CTFfind4_XmippCtf_CTFcons
(139, 1027, v2.0 (2019-04-23) Diocletian):
A basic workflow from movies to CTF consensus using only CPU
Carmen
(136, 868, (2018-05-18) (release-1.2.1 92b345f)):
Analyze the grids on a first load
ModelBuilding
(135, 811, v2.0 (2019-04-23) Diocletian):
model_instruct2019
Relion tutorial (part 2)
(132, 1015, v2.0 (2019-04-23) Diocletian):
Part of the workflow for Relion tutorial
workflow1
(129, 831, v2.0 (2019-04-23) Diocletian):
delete me
monores + localdeblur
(126, 777, v2.0 (2019-04-23) Diocletian):
Basic workflow importing a volume, estimating the local resolution by means of Xmipp - monores and using it to local sharpen the input volume.
NOTES: The monores is using an automatic masking. Monores needs noise surrounding the map, thus the input ...
Phase_plate in ScipionBox
(122, 830, v1.2.1 (2018-10-01) Claudio):
Phase_plate in ScipionBox
2D_class_streaming_GL2D_assignation
(120, 852, v2.0 (2019-04-23) Diocletian):
This piece of workflow makes an initial classification of 10k particles using relion2D and cryosparc2, making 32 classes each one. Afterwards, xmipp-GL2D is assigning the new incoming particles on-the-fly to one of the 64 initial classes. At the end, a...