Workflows

workflow_name (# downloads, # views, scipion version)
2D_class_streaming_GL2D_assignation (97, 594, v2.0 (2019-04-23) Diocletian): This piece of workflow makes an initial classification of 10k particles using relion2D and cryosparc2, making 32 classes each one. Afterwards, xmipp-GL2D is assigning the new incoming particles on-the-fly to one of the 64 initial classes. At the end, a...
Streaming_catalogue-1st_part (92, 662, (2018-05-25) (devel-fixes 7948a08)): First part of a streaming protocols, right before ctf selection due to technical issues.
CTFDiscrepancy (87, 625, 1.3): Compare CTF estimation given by two diferent packages.
WIS_D&G_impact (85, 534, v2.0 (2019-04-23) Diocletian): basic training
test (84, 461, v2.0 (2019-04-23) Diocletian): v1
streaming_to_2Dclassification_noDoseWeithed (76, 429, 2): This complete workflow is designed to work in streaming from movies to 2D classification in an assisted way. The recommended usage is importing it in an empty project, setting the protocol parameters according to your data and launching them one by one...
ARM_gain_test1 (66, 403, v2.0 (2019-04-08) Diocletian (release-2.0.0 37dd28f)): Adapted SerialEM-based workflow with NON corrected GAIN from K3
Day 1 alignment and reconstruction (52, 253, 3.0.0): Workflow shown and practiced during 2021 tomography course on Day 1 Tilt series alignment and tomogram reconstruction
Reprocessing of EMPIAR-10389 data (urease) with Scipion (50, 431, 1): Scipion workflow from: Using Relion software within Scipion framework Grigory Sharov, Dustin R. Morado, Marta Carroni, José Miguel de la Rosa-Trevín bioRxiv 2020.12.06.399808; doi: https://doi.org/10.1101/2020.12.06.399808
Spike (49, 330, 3.0.0): Workflow Roberto