Workflows

workflow_name (# downloads, # views, scipion version)
Relion_3_tutorial-betagal (593, 2070, v1.2.1 (2018-09-11) Claudio): Relion 3 tutorial in Scipion. Reaching 2.9 reported by monores.
Atom_Struct_Modeling_Demo (540, 1576, v2.0 (2019-03-06) Diocletian (release-2.0.0 99cd4821da)): Test project used in model building tutorial: https://github.com/I2PC/scipion/wiki/tutorials/tutorial_model_building_basic.pdf
BASIC_Import_Mcorr2_Ctffind4_Summar (389, 1147, 1.2): Basic workflow for facilities: motioncor, ctffind, summary
import_fitChimera_coot_refmac (389, 1085, 1.3): Basic model building; (1) import data, (2) rigid fit with chimera, (3) manual refinement coot and (4) automatic refinement refmac
Wokflow_with_gctf (384, 932, v1.2.1 (2018-10-01) Claudio): workflow with gctf
Phase_Plate_mottioncor_ctffing_gctf_gain (380, 1103, 1.2): Basic workflow for phase plate collection with motioncor2 ctffind gain and sumamry
streaming_2d_classification_in_batches (378, 904, 1.2.1): Streaming workflow from movies to relion 2d classification in batches.
All2Monitor_GPU_Import_Gain_Mcor2_MaxShift_gCTF_XmippCTF_CTFcons_Summary (368, 1009, v2.0 (2019-04-23) Diocletian): Workflow to monitor gain stability, movie alignment and ctf estimation using the summary monitor. GPU
demo_until_particlePrunning (364, 830, 2.0.0): Dynamic template to launch a form asking for: Deposition path, pattern, voltage, spherical aberration and sampling rate. NOTE: incluede this file to $SCIPION_HOME/pyworkflow/templates in .json.template format in order to be able to be open it by: sc...
fullProcessing_ScipionCombined_fromMoviesTo3Dbionotes (363, 987, v2.0 (2019-04-23) Diocletian): Full processing workflow from movies to 3D bionotes.