Workflows
workflow_name (# downloads, # views, scipion version)
Relion_3_tutorial-betagal
(581, 2017, v1.2.1 (2018-09-11) Claudio):
Relion 3 tutorial in Scipion. Reaching 2.9 reported by monores.
Atom_Struct_Modeling_Demo
(531, 1523, v2.0 (2019-03-06) Diocletian (release-2.0.0 99cd4821da)):
Test project used in model building tutorial: https://github.com/I2PC/scipion/wiki/tutorials/tutorial_model_building_basic.pdf
BASIC_Import_Mcorr2_Ctffind4_Summar
(386, 1106, 1.2):
Basic workflow for facilities: motioncor, ctffind, summary
import_fitChimera_coot_refmac
(381, 1043, 1.3):
Basic model building; (1) import data, (2) rigid fit with chimera, (3) manual refinement coot and (4) automatic refinement refmac
Wokflow_with_gctf
(379, 891, v1.2.1 (2018-10-01) Claudio):
workflow with gctf
Phase_Plate_mottioncor_ctffing_gctf_gain
(375, 1060, 1.2):
Basic workflow for phase plate collection with motioncor2 ctffind gain and sumamry
streaming_2d_classification_in_batches
(375, 860, 1.2.1):
Streaming workflow from movies to relion 2d classification in batches.
All2Monitor_GPU_Import_Gain_Mcor2_MaxShift_gCTF_XmippCTF_CTFcons_Summary
(363, 964, v2.0 (2019-04-23) Diocletian):
Workflow to monitor gain stability, movie alignment and ctf estimation using the summary monitor. GPU
demo_until_particlePrunning
(360, 785, 2.0.0):
Dynamic template to launch a form asking for: Deposition path, pattern, voltage, spherical aberration and sampling rate.
NOTE: incluede this file to $SCIPION_HOME/pyworkflow/templates in .json.template format in order to be able to be open it by: sc...
fullProcessing_ScipionCombined_fromMoviesTo3Dbionotes
(359, 941, v2.0 (2019-04-23) Diocletian):
Full processing workflow from movies to 3D bionotes.