Workflows
workflow_name (# downloads, # views, scipion version)
Relion_3_tutorial-betagal
(630, 2557, v1.2.1 (2018-09-11) Claudio):
Relion 3 tutorial in Scipion. Reaching 2.9 reported by monores.
Cryo electron microscopy of SARS-CoV-2 spike in prefusion state
(589, 812, 1.0):
Workflow associated to empiar entry 10516 and publication https://doi.org/10.1101/2020.07.08.191072
Atom_Struct_Modeling_Demo
(586, 2173, v2.0 (2019-03-06) Diocletian (release-2.0.0 99cd4821da)):
Test project used in model building tutorial: https://github.com/I2PC/scipion/wiki/tutorials/tutorial_model_building_basic.pdf
BASIC_Import_Mcorr2_Ctffind4_Summar
(422, 1596, 1.2):
Basic workflow for facilities: motioncor, ctffind, summary
import_fitChimera_coot_refmac
(421, 1648, 1.3):
Basic model building; (1) import data, (2) rigid fit with chimera, (3) manual refinement coot and (4) automatic refinement refmac
Wokflow_with_gctf
(421, 1590, v1.2.1 (2018-10-01) Claudio):
workflow with gctf
Phase_Plate_mottioncor_ctffing_gctf_gain
(416, 1609, 1.2):
Basic workflow for phase plate collection with motioncor2 ctffind gain and sumamry
streaming_2d_classification_in_batches
(413, 1663, 1.2.1):
Streaming workflow from movies to relion 2d classification in batches.
All2Monitor_GPU_Import_Gain_Mcor2_MaxShift_gCTF_XmippCTF_CTFcons_Summary
(400, 1473, v2.0 (2019-04-23) Diocletian):
Workflow to monitor gain stability, movie alignment and ctf estimation using the summary monitor. GPU
fullProcessing_ScipionCombined_fromMoviesTo3Dbionotes
(398, 1637, v2.0 (2019-04-23) Diocletian):
Full processing workflow from movies to 3D bionotes.