Workflows

workflow_name (# downloads, # views, scipion version)
Relion_3_tutorial-betagal (620, 2523, v1.2.1 (2018-09-11) Claudio): Relion 3 tutorial in Scipion. Reaching 2.9 reported by monores.
Cryo electron microscopy of SARS-CoV-2 spike in prefusion state (579, 781, 1.0): Workflow associated to empiar entry 10516 and publication https://doi.org/10.1101/2020.07.08.191072
Atom_Struct_Modeling_Demo (574, 2140, v2.0 (2019-03-06) Diocletian (release-2.0.0 99cd4821da)): Test project used in model building tutorial: https://github.com/I2PC/scipion/wiki/tutorials/tutorial_model_building_basic.pdf
BASIC_Import_Mcorr2_Ctffind4_Summar (412, 1567, 1.2): Basic workflow for facilities: motioncor, ctffind, summary
import_fitChimera_coot_refmac (411, 1618, 1.3): Basic model building; (1) import data, (2) rigid fit with chimera, (3) manual refinement coot and (4) automatic refinement refmac
Wokflow_with_gctf (410, 1561, v1.2.1 (2018-10-01) Claudio): workflow with gctf
Phase_Plate_mottioncor_ctffing_gctf_gain (406, 1574, 1.2): Basic workflow for phase plate collection with motioncor2 ctffind gain and sumamry
streaming_2d_classification_in_batches (402, 1633, 1.2.1): Streaming workflow from movies to relion 2d classification in batches.
All2Monitor_GPU_Import_Gain_Mcor2_MaxShift_gCTF_XmippCTF_CTFcons_Summary (391, 1439, v2.0 (2019-04-23) Diocletian): Workflow to monitor gain stability, movie alignment and ctf estimation using the summary monitor. GPU
fullProcessing_ScipionCombined_fromMoviesTo3Dbionotes (388, 1603, v2.0 (2019-04-23) Diocletian): Full processing workflow from movies to 3D bionotes.