Workflows

workflow_name (# downloads, # views, scipion version)
Relion_3_tutorial-betagal (648, 2612, v1.2.1 (2018-09-11) Claudio): Relion 3 tutorial in Scipion. Reaching 2.9 reported by monores.
Atom_Struct_Modeling_Demo (612, 2236, v2.0 (2019-03-06) Diocletian (release-2.0.0 99cd4821da)): Test project used in model building tutorial: https://github.com/I2PC/scipion/wiki/tutorials/tutorial_model_building_basic.pdf
Cryo electron microscopy of SARS-CoV-2 spike in prefusion state (606, 863, 1.0): Workflow associated to empiar entry 10516 and publication https://doi.org/10.1101/2020.07.08.191072
Wokflow_with_gctf (442, 1642, v1.2.1 (2018-10-01) Claudio): workflow with gctf
BASIC_Import_Mcorr2_Ctffind4_Summar (440, 1654, 1.2): Basic workflow for facilities: motioncor, ctffind, summary
import_fitChimera_coot_refmac (439, 1700, 1.3): Basic model building; (1) import data, (2) rigid fit with chimera, (3) manual refinement coot and (4) automatic refinement refmac
Phase_Plate_mottioncor_ctffing_gctf_gain (436, 1663, 1.2): Basic workflow for phase plate collection with motioncor2 ctffind gain and sumamry
streaming_2d_classification_in_batches (430, 1714, 1.2.1): Streaming workflow from movies to relion 2d classification in batches.
All2Monitor_GPU_Import_Gain_Mcor2_MaxShift_gCTF_XmippCTF_CTFcons_Summary (419, 1527, v2.0 (2019-04-23) Diocletian): Workflow to monitor gain stability, movie alignment and ctf estimation using the summary monitor. GPU
fullProcessing_ScipionCombined_fromMoviesTo3Dbionotes (417, 1691, v2.0 (2019-04-23) Diocletian): Full processing workflow from movies to 3D bionotes.